Introduction and setup

Estimated time NA minutes

Overview

Questions

Objectives

• Install required packages.
• Download the data.

Download data

---

The data we will use in this lesson is obtained from the Gene Expression Omnibus, accession number GSE96870.

R

dir.create("data", showWarnings = FALSE)
download.file(
    url = "https://github.com/Bioconductor/bioconductor-teaching/blob/master/data/GSE96870/GSE96870_counts_cerebellum.csv?raw=true", 
    destfile = "data/GSE96870_counts_cerebellum.csv"
)

download.file(
    url = "https://github.com/Bioconductor/bioconductor-teaching/blob/master/data/GSE96870/GSE96870_coldata_cerebellum.csv?raw=true", 
    destfile = "data/GSE96870_coldata_cerebellum.csv"
)

download.file(
    url = "https://github.com/Bioconductor/bioconductor-teaching/blob/master/data/GSE96870/GSE96870_coldata_all.csv?raw=true", 
    destfile = "data/GSE96870_coldata_all.csv"
)

download.file(
    url = "https://github.com/Bioconductor/bioconductor-teaching/blob/master/data/GSE96870/GSE96870_rowranges.tsv?raw=true", 
    destfile = "data/GSE96870_rowranges.tsv"
)

Keypoints

• Key point 1